Create a folder on your desktop called acoustic-workshop. Download the data folder zip, extract it to a folder on your desktop called acoustic-workshop. You should now have a folder called data inside of the acoustic-workshop folder.
Open RStudio and run this install script. It’s best to run it line by line instead of all at once in case there are errors. Note: When running through the installs, you may encounter a prompt asking you to upgrade dependent packages. Choosing Option 3: None, works in most situations and will prevent upgrades of packages you weren’t explicitly looking to upgrade.
install.packages("devtools")
# Tidyverse (data cleaning and arrangement)
install.packages('ggplot2')
install.packages('ggmap')
install.packages('dplyr')
install.packages('gganimate')
# animated GIF encoder
install.packages("gifski")
# Concise way to manipulate datasets
install.packages("data.table")
# Geospatial Data Manipulation and Vis Packages
install.packages('geosphere')
install.packages('rgdal')
install.packages('raster')
install.packages('mapdata')
install.packages('maptools')
install.packages("mapview")
install.packages("sf")
install.packages("rnaturalearth")
install.packages("plotly")
install.packages("sp", dependencies = TRUE)
# Network analysis
install.packages('igraph')
install.packages('viridis')
install.packages('lunar')
install.packages("httr", dependencies = TRUE)
install.packages("ncdf4",dependencies = TRUE)
# XTractomatic - match locations in time and space w/ model data via ERDDAP
devtools::install_github("rmendels/xtractomatic")
# VTrack - Tools for Telemetry Analysis
devtools::install_github("rossdwyer/VTrack")
# GLATOS - acoustic telemetry package that does filtering, vis, array simulation, etc.
install.packages('remotes')
library(remotes)
install_url("https://gitlab.oceantrack.org/GreatLakes/glatos/repository/master/archive.zip",
build_opts = c("--no-resave-data", "--no-manual"))
# Sensible Working Directory Manager
install.packages("here")Once the packages are installed, change your working directory in RStudio to acoustic-workshop using the files menu, or the setwd('~/Desktop/acoustic-workshop')