Requirements
R version: 3.6.x or newer and RStudio
Open RStudio and run this install script. It’s best to run it line by line instead of all at once in case there are errors.
Note: When running through the installs, you may encounter a prompt asking you to upgrade dependent packages. Choosing Option 3: None, works in most situations and will prevent upgrades of packages you weren’t explicitly looking to upgrade.
install.packages("devtools")
# Tidyverse (data cleaning and arrangement)
install.packages('tidyverse')
# Mapping spatial data
install.packages('plotly')
# VTrack - Tools for Telemetry Analysis
devtools::install_github("rossdwyer/VTrack")
# GLATOS - acoustic telemetry package that does filtering, vis, array simulation, etc.
install.packages('remotes')
library(remotes)
install_url("https://gitlab.oceantrack.org/GreatLakes/glatos/-/archive/master/glatos-master.zip",
build_opts = c("--no-resave-data", "--no-manual"))
Once the packages are installed, create a new directory and set your working directory using setwd('<path-to-folder>')
If you don’t want to live code along, we have provided R Markdown files for each lesson which can be downloaded here, but we highly recommend coding along with the rest of the workshop.